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Cytosim
PI
Cytoskeleton Simulator
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This is the complete list of members for Simul, including all inherited members.
| add(Object *) | Simul | |
| add(ObjectList) | Simul | |
| analyzeClusters() const | Simul | |
| beads | Simul | |
| calculateForces() const | Simul | |
| couples | Simul | |
| custom0() | Simul | |
| custom1() | Simul | |
| custom2() | Simul | |
| custom3() | Simul | |
| custom4() | Simul | |
| custom5() | Simul | |
| custom6() | Simul | |
| custom7() | Simul | |
| custom8() | Simul | |
| custom9() | Simul | |
| dump() const | Simul | inline |
| erase(Object *) | Simul | |
| erase(ObjectList) | Simul | |
| erase() | Simul | |
| fibers | Simul | |
| fields | Simul | |
| findFiber(long num) const | Simul | inline |
| findObject(const Tag, long) | Simul | |
| findObject(const std::string &, long) const | Simul | |
| findProperties(const std::string &) const | Simul | |
| findProperty(const std::string &, const std::string &) const | Simul | |
| findProperty(const std::string &, const int index) const | Simul | |
| findSet(const std::string &kind) | Simul | |
| findSet(const std::string &kind) const | Simul | inline |
| findSingleProp(const std::string &nm) const | Simul | |
| firstSpace(const std::string &name) | Simul | |
| foldPosition() const | Simul | |
| initialize(Glossary &) | Simul | |
| isProperty(const std::string &) const | Simul | |
| isReady() const | Simul | inline |
| mark(ObjectList, int) | Simul | |
| newProperty(const std::string &, const std::string &, Glossary &) | Simul | |
| organizers | Simul | |
| prepare(Space *spc) | Simul | |
| prepare() | Simul | inline |
| prop | Simul | |
| properties | Simul | |
| readObjects(InputWrapper &) | Simul | |
| readObjects(std::string const &file) | Simul | |
| readReference(InputWrapper &, char &tag) | Simul | |
| relax() | Simul | inline |
| remove(Object *) | Simul | |
| remove(ObjectList) | Simul | |
| report(std::ostream &, std::string const &str, Glossary &) const | Simul | |
| report(std::ostream &, std::string const &what, std::string const &who, Glossary &) const | Simul | |
| reportBeadPosition(std::ostream &) const | Simul | |
| reportBeadSingles(std::ostream &) const | Simul | |
| reportClusters(std::ostream &, bool) const | Simul | |
| reportCouple(std::ostream &) const | Simul | |
| reportCouplePosition(std::ostream &) const | Simul | |
| reportCouplePosition(std::ostream &, std::string const &) const | Simul | |
| reportCustom(std::ostream &) const | Simul | |
| reportFiber(std::ostream &) const | Simul | |
| reportFiberDynamic(std::ostream &, FiberEnd) const | Simul | |
| reportFiberDynamic(std::ostream &) const | Simul | |
| reportFiberEnds(std::ostream &) const | Simul | |
| reportFiberForces(std::ostream &) const | Simul | |
| reportFiberLengthDistribution(std::ostream &, real delta, real max) const | Simul | |
| reportFiberLengths(std::ostream &) const | Simul | |
| reportFiberPoints(std::ostream &) const | Simul | |
| reportFiberSegments(std::ostream &) const | Simul | |
| reportFiberSpeckles(std::ostream &, real) const | Simul | |
| reportFiberStates(std::ostream &) const | Simul | |
| reportFiberTension(std::ostream &, Glossary &opt) const | Simul | |
| reportOrganizer(std::ostream &) const | Simul | |
| reportSingle(std::ostream &) const | Simul | |
| reportSingleForce(std::ostream &) const | Simul | |
| reportSinglePosition(std::ostream &) const | Simul | |
| reportSinglePosition(std::ostream &, std::string const &) const | Simul | |
| reportSolid(std::ostream &) const | Simul | |
| reportSpace(std::ostream &) const | Simul | |
| reportSphere(std::ostream &) const | Simul | |
| reportTime(std::ostream &) const | Simul | |
| setInteractions(Meca &) const | Simul | |
| setTime(real t) | Simul | inline |
| simTime() const | Simul | inline |
| Simul() | Simul | |
| singles | Simul | |
| solids | Simul | |
| solve() | Simul | |
| space(Space *spc) | Simul | |
| space() const | Simul | inline |
| spaces | Simul | |
| spheres | Simul | |
| step() | Simul | |
| writeObjects(OutputWrapper &) const | Simul | |
| writeObjects(std::string const &file, bool binary, bool append) const | Simul | |
| writeProperties(std::ostream &, bool prune) const | Simul | |
| writeProperties(std::string &file, bool prune) const | Simul | |
| ~Simul() | Simul | virtual |